Split a dataset created by Tensorflow dataset API in to Train and Test?

Question

Does anyone know how to split a dataset created by the dataset API (tf.data.Dataset) in Tensorflow into Test and Train?

Answer 1

Assuming you have all_dataset variable of tf.data.Dataset type:

test_dataset = all_dataset.take(1000) 
train_dataset = all_dataset.skip(1000)

Test dataset now has first 1000 elements and the rest goes for training.

Answer 2

You may use Dataset.take() and Dataset.skip():

train_size = int(0.7 * DATASET_SIZE)
val_size = int(0.15 * DATASET_SIZE)
test_size = int(0.15 * DATASET_SIZE)

full_dataset = tf.data.TFRecordDataset(FLAGS.input_file)
full_dataset = full_dataset.shuffle()
train_dataset = full_dataset.take(train_size)
test_dataset = full_dataset.skip(train_size)
val_dataset = test_dataset.skip(val_size)
test_dataset = test_dataset.take(test_size)

For more generality, I gave an example using a 70/15/15 train/val/test split but if you don't need a test or a val set, just ignore the last 2 lines.

Take:

Creates a Dataset with at most count elements from this dataset.

Skip:

Creates a Dataset that skips count elements from this dataset.

You may also want to look into Dataset.shard():

Creates a Dataset that includes only 1/num_shards of this dataset.

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Disclaimer I stumbled upon this question after answering this one so I thought I'd spread the love

Answer 3

Most of the answers here use take() and skip(), which requires knowing the size of your dataset before hand. This isn't always possible, or is difficult/intensive to ascertain.

Instead what you can do is to essentially slice the dataset up so that 1 every N records becomes a validation record.

To accomplish this, lets start with a simple dataset of 0-9:

dataset = tf.data.Dataset.range(10)
# [0, 1, 2, 3, 4, 5, 6, 7, 8, 9]

Now for our example, we're going to slice it so that we have a 3/1 train/validation split. Meaning 3 records will go to training, then 1 record to validation, then repeat.

split = 3
dataset_train = dataset.window(split, split + 1).flat_map(lambda ds: ds)
# [0, 1, 2, 4, 5, 6, 8, 9]
dataset_validation = dataset.skip(split).window(1, split + 1).flat_map(lambda ds: ds)
# [3, 7]

So the first dataset.window(split, split + 1) says to grab split number (3) of elements, then advance split + 1 elements, and repeat. That + 1 effectively skips the 1 element we're going to use in our validation dataset.
The flat_map(lambda ds: ds) is because window() returns the results in batches, which we don't want. So we flatten it back out.

Then for the validation data we first skip(split), which skips over the first split number (3) of elements that were grabbed in the first training window, so we start our iteration on the 4th element. The window(1, split + 1) then grabs 1 element, advances split + 1 (4), and repeats.

 

Note on nested datasets:
The above example works well for simple datasets, but flat_map() will generate an error if the dataset is nested. To address this, you can swap out the flat_map() with a more complicated version that can handle both simple and nested datasets:

.flat_map(lambda *ds: ds[0] if len(ds) == 1 else tf.data.Dataset.zip(ds))

Answer 4

@ted's answer will cause some overlap. Try this.

train_ds_size = int(0.64 * full_ds_size)
valid_ds_size = int(0.16 * full_ds_size)

train_ds = full_ds.take(train_ds_size)
remaining = full_ds.skip(train_ds_size)  
valid_ds = remaining.take(valid_ds_size)
test_ds = remaining.skip(valid_ds_size)

use code below to test.

tf.enable_eager_execution()

dataset = tf.data.Dataset.range(100)

train_size = 20
valid_size = 30
test_size = 50

train = dataset.take(train_size)
remaining = dataset.skip(train_size)
valid = remaining.take(valid_size)
test = remaining.skip(valid_size)

for i in train:
    print(i)

for i in valid:
    print(i)

for i in test:
    print(i)

Answer 5

Now Tensorflow doesn't contain any tools for that.
You could use sklearn.model_selection.train_test_split to generate train/eval/test dataset, then create tf.data.Dataset respectively.

Answer 6

You can use shard:

dataset = dataset.shuffle()  # optional
trainset = dataset.shard(2, 0)
testset = dataset.shard(2, 1)

See: https://www.tensorflow.org/api_docs/python/tf/data/Dataset#shard

Answer 7

In case size of the dataset is known:

from typing import Tuple
import tensorflow as tf

def split_dataset(dataset: tf.data.Dataset, 
                  dataset_size: int, 
                  train_ratio: float, 
                  validation_ratio: float) -> Tuple[tf.data.Dataset, tf.data.Dataset, tf.data.Dataset]:
    assert (train_ratio + validation_ratio) < 1

    train_count = int(dataset_size * train_ratio)
    validation_count = int(dataset_size * validation_ratio)
    test_count = dataset_size - (train_count + validation_count)

    dataset = dataset.shuffle(dataset_size)

    train_dataset = dataset.take(train_count)
    validation_dataset = dataset.skip(train_count).take(validation_count)
    test_dataset = dataset.skip(validation_count + train_count).take(test_count)

    return train_dataset, validation_dataset, test_dataset

Example:

size_of_ds = 1001
train_ratio = 0.6
val_ratio = 0.2

ds = tf.data.Dataset.from_tensor_slices(list(range(size_of_ds)))
train_ds, val_ds, test_ds = split_dataset(ds, size_of_ds, train_ratio, val_ratio)

Answer 8

Can't comment, but above answer has overlap and is incorrect. Set BUFFER_SIZE to DATASET_SIZE for perfect shuffle. Try different sized val/test size to verify. Answer should be:

DATASET_SIZE = tf.data.experimental.cardinality(full_dataset).numpy()
train_size = int(0.7 * DATASET_SIZE)
val_size = int(0.15 * DATASET_SIZE)
test_size = int(0.15 * DATASET_SIZE)

full_dataset = full_dataset.shuffle(BUFFER_SIZE)
train_dataset = full_dataset.take(train_size)
test_dataset = full_dataset.skip(train_size)
val_dataset = test_dataset.take(val_size)
test_dataset = test_dataset.skip(val_size)