I am using markdown-it, so I edited rules by adding the pathname to every links.
var md = window.markdownit()
.use(window.markdownitFootnote);
md.renderer.rules.footnote_ref = function (tokens, idx) {
var n = Number(tokens[idx].meta.id + 1).toString();
var id = 'fnref' + n;
var uri = window.location.pathname;
if (tokens[idx].meta.subId > 0) {
id += ':' + tokens[idx].meta.subId;
}
return '<sup class="footnote-ref"><a href="' + uri + '#fn' + n + '" id="' + id + '">[' + n + ']</a></sup>';
};
md.renderer.rules.footnote_anchor = function(tokens, idx) {
var n = Number(tokens[idx].meta.id + 1).toString();
var id = 'fnref' + n;
var uri = window.location.pathname;
if (tokens[idx].meta.subId > 0) {
id += ':' + tokens[idx].meta.subId;
}
return ' <a href="' + uri + '#' + id + '" class="footnote-backref">\u21a9</a>'; /* ↩ */
};
Non specific solution :
$(document).ready(function () {
var pathname = window.location.pathname;
$('a').each(function () {
var link = $(this).attr('href');
if (link.substr(0,1) == "#") {
$(this).attr('href', pathname + link);
}
});
}